Bioconductor WGCNA package

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RNA-seq WGCNA package soft power

written 7.4 years ago by modarzi ▴ 10

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wgcna WGCNA wgcna package

5.9 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 7.0 years ago by bekah ▴ 40

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wgcna wgcna package

7.0 years ago Jack • 0

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wgcna package wgcna

7.1 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by modarzi ▴ 10

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wgcna package software error

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.2 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.3 years ago • updated 7.2 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 7.3 years ago by Peter Langfelder ★ 3.0k • written 7.3 years ago by bdy8 ▴ 10

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1.9k

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wgcna wgcna package

7.3 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

7.3 years ago bekah ▴ 40

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24k

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wgcna package

updated 7.4 years ago by Peter Langfelder ★ 3.0k • written 7.4 years ago by bekah ▴ 40

13 results • Page 1 of 1

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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