Showing : WGCNA package • reset
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WGCNA trait order in heat map
wgcna WGCNA wgcna package
4.8 years ago coyoung ▴ 10
0
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2
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3.2k
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Module preservation WGCNA
wgcna wgcna package modulepreservation
updated 6.0 years ago by ★ 3.0k • written 6.0 years ago by ▴ 40
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1
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2.2k
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WGCNA: Matching eigengenes to samples
wgcna wgcna package
6.0 years ago Jack • 0
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2
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1.4k
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Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
6.0 years ago anni.djurhuus • 0
2
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3
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1.7k
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Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 6.1 years ago by 67k • written 6.1 years ago by ▴ 10
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2
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3.6k
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TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package software error
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by • 0
0
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0
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1.2k
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consensus module relationship
wgcna wgcna package consensus
6.2 years ago 2323982403 ▴ 60
2
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4
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1.8k
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Segfault error when loading WGCNA
wgcna wgcna package
6.2 years ago antoinefelden ▴ 10
2
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2
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5.5k
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WGCNA extract genes from a module
WGCNA wgcna package
updated 6.3 years ago by ★ 3.0k • written 6.3 years ago by ▴ 10
1
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3
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1.5k
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SampleNetwork in WGCNA
wgcna wgcna package
6.3 years ago 2323982403 ▴ 60
0
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0
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2.7k
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Use of bicor in WGCNA
WGCNA wgcna package wgcna bicor
6.3 years ago bekah ▴ 40
12
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15
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18k
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WGCNA: Understanding module-trait correlations
wgcna package
updated 6.3 years ago by ★ 3.0k • written 6.3 years ago by ▴ 40
0
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0
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1.0k
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
6.4 years ago modarzi ▴ 10
13 results • Page 1 of 1
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Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
Yes. Samples in columns and genes in rows.
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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